In the wtrunner-macros.xml, where it launches the application then starts the tests it reads
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<arg value="-application" />
<arg value="com.windowtester.runner.application" />
This overwrites the value of the 'eclipse.application' in the product's config.ini file. Unfortunately, it appears the product is dependent on the value it has set. Meaning, when I launch via ant with com.windowtester.runner.application set as the application, the product doesn't work; the tests launch but fail because perspectives and such aren't set up properly.
Is there a way around setting the application like this or a way to run both? Any suggestions are very welcome.